I know you say yours is gone, but still going to respond to help others in the future that search for this.
In my experience, I have been able to confirm what many others say...alkalinity swings can easily cause STN/RTN. When I first set up my dosing pump, I swung my alk from 5-10 over 2 days...way too quick. This caused STN in my birdsnest. Luckily returning to normal values resolved it and its grown back.
In the past with STN/RTN, fragging the entire colony is your best bet. However, recently I have tried (successfully) the super glue method. You put a line of super glue on living tissue about a half inch from the dead. This will kill the living in that area and create a sort of "fire line". Since most assume this is a bacteria infection that will keep moving, the "fire line" helps to stop it from progressing further.