For some reason, many larger reef tanks made by Oceanic have 1" drains and 3/4" returns.
We prefer to have 1.5" drains and 1" returns. Not so much for the ability to flow more water through them, but to assure we won't exceed them nor clog them.
You want option #2 because there is more linear surface skimming on the larger boxes. That helps keep the surface clean of any scum.