Well, the basic idea of the sump, besides to increase water volume, is to put all the equipment you don't want in your display into...
So, heaters (Or heaters in your overflows, where I keep mine), skimmers, probes, ATO outputs, etc...
Baffles, of course, are a good thing, to help eliminate microbubbles...
Is there anyway you could drill holes in the dividers, and run some PVC from one side to the other? Maybe put books or something in front of the plumbing so it's not visible? (Or even better, put a display refuguim in the middle portion!)
I've never run a system with 2 sumps (Which is basically what you're describing, regardless that one of them would be a fuge)... I THINK you'd be fine doing that, but I can't say for sure. Any inequality in the pumps should be made up for by the water overflowing and coming back to the sumps, but something about that design just makes me nervous, can't exactly put my finger on it...